Tag field::biology - Biology

• achilles - An artificial life and evolution simulator
• adun.app - Molecular Simulator for GNUstep
• amap-align - Protein multiple alignment by sequence annealing
• avida-base - Auto-adaptive genetic system for Artificial Life research
• avida-qt-viewer - qt viewer for avida
• avida-viewer - ncurses viewer for avida
• biococoa.app - biological sequence file format conversion applet for GNUstep
• biomode -
• bioperl - Perl tools for computational molecular biology
• biosquid - utilities for biological sequence analysis
• biosquid-dev - headers and static library for biological sequence analysis
• blast2 - Basic Local Alignment Search Tool
• boinc-client - core client for the BOINC distributed computing infrastructure
• boxshade - Pretty-printing of multiple sequence alignments
• chemical-mime-data - chemical MIME and file type support for desktops
• cl-pubmed - Common Lisp package to query Pubmed medical literature database
• clustalw-mpi - MPI-distributed global sequence alignment with ClustalW
• clustalx - Multiple alignment of nucleic acid and protein sequences (graphical interface)
• ctn - Central Test Node, a DICOM implementation for medical imaging
• ctn-dev - Development files for Central Test Node, a DICOM implementation
• ctn-doc - Documentation for Central Test Node, a DICOM implementation
• cultivation - game about the interactions within a gardening community
• dialign - Segment-based multiple sequence alignment
• emboss - the european molecular biology open software suite
• emboss-explorer - web-based GUI to EMBOSS
• fastdnaml - Tool for construction of phylogenetic trees of DNA sequences
• fastlink - A faster version of pedigree programs of Linkage
• fastlink-doc - Some papers about fastlink
• garlic - A visualization program for biomolecules
• garlic-doc - [Chemistry] a molecular visualization program - documents
• genesis - general-purpose neural simulator
• genesis-data - scripts and documentation for genesis
• gff2aplot - pair-wise alignment-plots for genomic sequences in PostScript
• gff2ps - produces PostScript graphical output from GFF-files
• gromacs - Molecular dynamics simulator, with building and analysis tools
• gromacs-dev - GROMACS molecular dynamics sim, development kit
• gromacs-lam - Transition package to gromacs-openmpi
• gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
• hmmer - profile hidden Markov models for protein sequence analysis
• hmmer-doc - profile hidden Markov models for protein sequence analysis (docs)
• hmmer-pvm -
• horae - interactive graphical processing and analysis of EXAFS data
• horae-examples -
• ifeffit - An interactive program for XAFS analysis
• kalign - Global and progressive multiple sequence alignment
• libbio-asn1-entrezgene-perl - parser for NCBI Entrez Gene and NCBI Sequence records
• libbio-ruby - bioruby tools for computational molecular biology
• libemboss-acd-perl - perl module to parse EMBOSS ACD files
• libncbi6 - NCBI libraries for biology applications
• libncbi6-dbg - NCBI libraries for biology applications (debugging symbols)
• libncbi6-dev - NCBI libraries for biology applications (development files)
• libvibrant6-dev - NCBI libraries for graphic biology applications (development files)
• libvibrant6a - NCBI libraries for graphic biology applications
• libvibrant6a-dbg - NCBI libraries for graphic biology applications (unstripped)
• loki - MCMC linkage analysis on general pedigrees
• loki-doc - Postscript manual for loki
• mafft - Multiple alignment program for amino acid or nucleotide sequences
• med-bio - Debian Med micro-biology packages
• med-bio-dev - Debian Med packages for development of micro-biology applications
• med-cms -
• med-doc - Debian Med documentation packages
• med-imaging - Debian Med imaging packages
• med-imaging-dev - Debian Med packages for medical image development
• med-pharmacy - Debian Med packages for pharmaceutical research
• med-physics - Debian Med packages for medical physicists
• med-tools - Debian Med several tools
• medcon - Medical Image (DICOM, ECAT, ...) conversion tool
• minc-tools - MNI medical image format tools
• mipe - Tools to store PCR-derived data
• molphy - Program Package for MOLecular PHYlogenetics
• mozilla-biofox - extension of bioinformatics tools to Iceape and Iceweasel browsers
• mummer - Efficient sequence alignment of full genomes
• mummer-doc - Documentation for MUMmer
• muscle - Multiple alignment program of protein sequences
• ncbi-data - Platform-independent data for the NCBI toolkit
• ncbi-epcr - Tool to test a DNA sequence for the presence of sequence tagged sites
• ncbi-tools-bin - NCBI libraries for biology applications (text-based utilities)
• ncbi-tools-x11 - NCBI libraries for biology applications (X-based utilities)
• njplot - A phylogenetic tree drawing program
• openmpi-bin - high performance message passing library -- binaries
• phylip - package of programs for inferring phylogenies
• phylip-doc - package of programs for inferring phylogenies
• poa - Partial Order Alignment for multiple sequence alignment
• primer3 - Tool to design flanking oligo nucleotides for DNA amplification
• probcons - PROBabilistic CONSistency-based multiple sequence alignment
• probcons-extra - Extra programs from the probcons package
• proda - multiple alignment of protein sequences
• python-biopython - Python library for bioinformatics
• python-biopython-doc - Documentation for the Biopython library
• python-biopython-martel -
• python-biopython-sql - Biopython support for the BioSQL database schema
• r-cran-qtl - GNU R package for genetic marker linkage analysis
• raster3d - tools for generating images of proteins or other molecules
• raster3d-doc - documents and example files for Raster3D
• readseq - [Biology] Conversion between sequence formats
• resmed-doc - Collection of requirements on medical software
• seaview - Multiplatform interface for sequence alignment and phylogeny
• sibsim4 - align expressed RNA sequences on a DNA template
• sigma-align - Simple greedy multiple alignment of non-coding DNA sequences
• sim4 - tool for aligning cDNA and genomic DNA
• t-coffee - Multiple Sequence Alignment
• texlive-lang-german - TeX Live: German
• tigr-glimmer - Gene detection in archea and bacteria
• tree-puzzle - Reconstruction of phylogenetic trees by maximum likelihood
• tree-puzzle-doc - Reconstruction of phylogenetic trees by maximum likelihood
• treeviewx - Displays and prints phylogenetic trees
• wise - comparison of biopolymers, commonly DNA and protein sequences
• wise-doc - documentation for the wise package
• xmedcon - Medical Image (DICOM, ECAT, ...) conversion tool